Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25823065..25825573-chr10:25861893..25863444,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1029178	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10828819	0.86[GIH][hapmap]
rs10828829	0.83[YRI][hapmap]
rs11014599	0.93[CHD][hapmap];0.85[JPT][hapmap];0.89[MEX][hapmap];0.83[AMR][1000 genomes]
rs11014602	0.84[ASN][1000 genomes]
rs11014607	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs11014616	0.95[ASN][1000 genomes]
rs11014617	0.83[YRI][hapmap]
rs11014618	0.83[YRI][hapmap]
rs11816330	0.95[ASN][1000 genomes]
rs11817700	0.88[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs12246035	0.83[YRI][hapmap]
rs12257236	0.88[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs12359026	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1335193	0.80[YRI][hapmap]
rs1414047	0.85[JPT][hapmap]
rs57957597	0.95[ASN][1000 genomes]
rs58382847	0.95[ASN][1000 genomes]
rs7083288	0.88[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs7084676	0.88[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs7087655	0.86[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs7094805	0.82[JPT][hapmap]
rs7899012	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv550227	chr10:25843019-25865744	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv894972	chr10:25849998-25917909	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25861600-25873800	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search: