Variant report

Variant	rs7899012
Chromosome Location	chr10:25841315-25841316
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25833305..25835524-chr10:25841251..25843498,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10764559	0.87[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs10764561	0.87[EUR][1000 genomes]
rs10764562	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs10828818	0.83[JPT][hapmap]
rs10828819	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828824	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828826	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828827	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs11014612	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs11014613	0.88[ASN][1000 genomes]
rs11815379	0.82[GIH][hapmap]
rs12245398	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1335199	0.83[JPT][hapmap]
rs1335200	0.83[JPT][hapmap]
rs1414040	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs1414041	0.89[YRI][hapmap]
rs1414044	0.88[ASN][1000 genomes]
rs1414045	0.87[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs1414046	0.88[ASN][1000 genomes]
rs1981117	0.82[JPT][hapmap]
rs4747530	0.83[JPT][hapmap]
rs6482493	0.89[YRI][hapmap]
rs6482494	0.82[JPT][hapmap]
rs6482496	0.86[ASN][1000 genomes]
rs7079198	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7083288	0.86[GIH][hapmap]
rs7087655	0.86[GIH][hapmap]
rs7088106	0.87[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs7100209	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7100629	0.83[JPT][hapmap]
rs7101141	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs7358105	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7903336	0.83[YRI][hapmap]
rs7911256	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs7915074	0.86[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7917704	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.88[ASN][1000 genomes]
rs7919640	0.83[JPT][hapmap]
rs7922110	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs9919420	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25836800-25844800	Weak transcription	NH-A	brain
2	chr10:25839200-25843600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:25840800-25841400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr10:25841200-25841400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:25841200-25841400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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