Variant report

Variant	rs7917704
Chromosome Location	chr10:25845956-25845957
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25821157..25824087-chr10:25844116..25846156,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10741094	0.82[JPT][hapmap]
rs10764559	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs10764561	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10764562	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs10828819	0.85[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10828820	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10828824	0.93[ASN][1000 genomes]
rs10828826	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828827	0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs11014610	0.87[JPT][hapmap]
rs11014612	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs11014613	0.97[ASN][1000 genomes]
rs12245398	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1414040	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1414041	0.83[JPT][hapmap]
rs1414042	0.83[JPT][hapmap]
rs1414043	0.83[JPT][hapmap]
rs1414044	0.97[ASN][1000 genomes]
rs1414045	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1414046	0.97[ASN][1000 genomes]
rs1414052	0.83[JPT][hapmap]
rs6482493	0.87[JPT][hapmap]
rs6482494	0.91[JPT][hapmap]
rs6482496	0.94[ASN][1000 genomes]
rs7079198	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7088106	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs7100209	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[ASN][1000 genomes]
rs7101141	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7358105	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7899012	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.88[ASN][1000 genomes]
rs7903204	0.87[JPT][hapmap]
rs7903336	0.87[JPT][hapmap]
rs7911256	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.97[ASN][1000 genomes]
rs7913399	0.83[JPT][hapmap]
rs7915074	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.98[ASN][1000 genomes]
rs7922110	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs7922752	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv550227	chr10:25843019-25865744	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25843000-25847200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:25843600-25846400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:25844800-25846600	Enhancers	HUVEC	blood vessel
4	chr10:25844800-25846600	Enhancers	NH-A	brain
5	chr10:25845000-25846400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:25845000-25846400	Enhancers	Fetal Stomach	stomach
7	chr10:25845000-25846600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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