Variant report

Variant	rs10828819
Chromosome Location	chr10:25839432-25839433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25836858..25839438-chr10:25841392..25844973,3	K562	blood:
2	chr10:25835478..25839771-chr10:25841392..25844555,4	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10764559	0.87[CEU][hapmap];0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs10764561	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10764562	0.85[CEU][hapmap];0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs10828820	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828824	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10828826	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828827	0.81[CHB][hapmap]
rs11014612	0.87[CEU][hapmap];0.95[CHB][hapmap];0.80[ASN][1000 genomes]
rs11014613	0.80[ASN][1000 genomes]
rs11815379	0.86[GIH][hapmap]
rs12245398	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1414040	0.87[CEU][hapmap];0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs1414041	0.89[YRI][hapmap]
rs1414044	0.80[ASN][1000 genomes]
rs1414045	0.87[CEU][hapmap];0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs1414046	0.80[ASN][1000 genomes]
rs4749046	0.82[JPT][hapmap]
rs6482493	0.89[YRI][hapmap]
rs7079198	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7083288	0.83[GIH][hapmap]
rs7087655	0.83[GIH][hapmap]
rs7088106	0.87[CEU][hapmap];0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs7100209	0.87[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.80[ASN][1000 genomes]
rs7101141	0.87[CEU][hapmap];0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs7358105	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7899012	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7903336	0.83[YRI][hapmap]
rs7911256	0.87[CEU][hapmap];0.91[CHB][hapmap];0.85[MEX][hapmap];0.80[ASN][1000 genomes]
rs7915074	0.86[ASW][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.93[MEX][hapmap];0.81[ASN][1000 genomes]
rs7917704	0.85[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7922110	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10828819	DNAH1	trans	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25836600-25841200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:25836800-25844800	Weak transcription	NH-A	brain
3	chr10:25838200-25840800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:25839200-25840800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:25839200-25843600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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