Variant report

Variant	rs7070879
Chromosome Location	chr10:25966730-25966731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11014622	1.00[ASN][1000 genomes]
rs11014623	1.00[ASN][1000 genomes]
rs11014625	1.00[ASN][1000 genomes]
rs12355530	1.00[ASN][1000 genomes]
rs12357174	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1335195	1.00[CHB][hapmap]
rs1335196	1.00[CHB][hapmap]
rs1335197	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16926124	1.00[CHB][hapmap]
rs16926153	1.00[CHB][hapmap]
rs16926172	1.00[CHB][hapmap]
rs16926240	0.91[AFR][1000 genomes]
rs17557337	1.00[ASN][1000 genomes]
rs17557638	1.00[ASN][1000 genomes]
rs17737176	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17737261	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437383	1.00[CHB][hapmap]
rs2505429	1.00[CHB][hapmap]
rs34567803	1.00[ASN][1000 genomes]
rs4237372	1.00[ASN][1000 genomes]
rs4237374	1.00[ASN][1000 genomes]
rs4523593	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4747532	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4747533	1.00[ASN][1000 genomes]
rs4749050	1.00[ASN][1000 genomes]
rs55752620	0.91[AFR][1000 genomes]
rs55945306	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386940	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58949541	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59190298	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61613087	0.92[AFR][1000 genomes]
rs61846881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61846904	0.89[AFR][1000 genomes]
rs61846905	1.00[EUR][1000 genomes]
rs61846907	0.84[AFR][1000 genomes]
rs6482497	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6482498	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6482499	1.00[CHB][hapmap]
rs6482509	0.92[AFR][1000 genomes]
rs7076933	0.92[AFR][1000 genomes]
rs7091731	1.00[ASN][1000 genomes]
rs7094086	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095138	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7098875	0.92[AFR][1000 genomes]
rs7099100	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722969	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906914	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7911892	1.00[CHB][hapmap]
rs7921299	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9664692	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044482	chr10:25889919-25977270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv521776	chr10:25966369-25966730	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25962800-25993600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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