Variant report

Variant	rs55945306
Chromosome Location	chr10:25921045-25921046
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10764555	1.00[ASN][1000 genomes]
rs11014622	1.00[ASN][1000 genomes]
rs11014623	1.00[ASN][1000 genomes]
rs11014625	1.00[ASN][1000 genomes]
rs12355530	1.00[ASN][1000 genomes]
rs12357174	1.00[ASN][1000 genomes]
rs1329249	1.00[ASN][1000 genomes]
rs1329250	1.00[ASN][1000 genomes]
rs1329254	1.00[ASN][1000 genomes]
rs1335197	1.00[ASN][1000 genomes]
rs1360124	1.00[ASN][1000 genomes]
rs1410930	1.00[ASN][1000 genomes]
rs1547685	1.00[ASN][1000 genomes]
rs17557337	1.00[ASN][1000 genomes]
rs17557638	1.00[ASN][1000 genomes]
rs1773635	1.00[ASN][1000 genomes]
rs17737176	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17737261	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1928364	1.00[ASN][1000 genomes]
rs1999111	1.00[ASN][1000 genomes]
rs2480346	1.00[ASN][1000 genomes]
rs2480350	1.00[ASN][1000 genomes]
rs2987837	1.00[ASN][1000 genomes]
rs3005186	1.00[ASN][1000 genomes]
rs3005188	1.00[ASN][1000 genomes]
rs3005190	1.00[ASN][1000 genomes]
rs3005192	1.00[ASN][1000 genomes]
rs3118971	1.00[ASN][1000 genomes]
rs34567803	1.00[ASN][1000 genomes]
rs4237372	1.00[ASN][1000 genomes]
rs4237374	1.00[ASN][1000 genomes]
rs4523593	1.00[ASN][1000 genomes]
rs4747532	1.00[ASN][1000 genomes]
rs4747533	1.00[ASN][1000 genomes]
rs4749050	1.00[ASN][1000 genomes]
rs56386940	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58949541	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59190298	0.92[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61846881	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61846905	0.91[EUR][1000 genomes]
rs6482497	1.00[ASN][1000 genomes]
rs6482498	1.00[ASN][1000 genomes]
rs702979	1.00[ASN][1000 genomes]
rs7070879	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091731	1.00[ASN][1000 genomes]
rs7094086	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095138	0.89[EUR][1000 genomes]
rs7099100	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722969	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904866	1.00[ASN][1000 genomes]
rs7906914	0.90[EUR][1000 genomes]
rs7921299	1.00[ASN][1000 genomes]
rs7921635	1.00[ASN][1000 genomes]
rs824606	1.00[ASN][1000 genomes]
rs824611	1.00[ASN][1000 genomes]
rs866089	1.00[ASN][1000 genomes]
rs866869	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1044482	chr10:25889919-25977270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25919600-25922400	Enhancers	Adipose Nuclei	Adipose
2	chr10:25919800-25921200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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