Variant report

Variant	rs1410930
Chromosome Location	chr10:25756675-25756676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25756226..25758820-chr10:25766240..25768212,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10764555	1.00[ASN][1000 genomes]
rs11014622	1.00[ASN][1000 genomes]
rs11014623	1.00[ASN][1000 genomes]
rs11014625	1.00[ASN][1000 genomes]
rs12355530	1.00[ASN][1000 genomes]
rs12357174	1.00[ASN][1000 genomes]
rs1329249	1.00[ASN][1000 genomes]
rs1329250	1.00[ASN][1000 genomes]
rs1329254	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335197	1.00[ASN][1000 genomes]
rs1360124	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547685	0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17557337	1.00[ASN][1000 genomes]
rs17557638	1.00[ASN][1000 genomes]
rs1773635	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1928364	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999111	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs2480346	0.96[CEU][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2480350	0.87[CEU][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2987837	0.96[CEU][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3005186	0.80[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3005188	0.96[CEU][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3005190	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3005192	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118971	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237372	1.00[ASN][1000 genomes]
rs4237374	1.00[ASN][1000 genomes]
rs4523593	1.00[ASN][1000 genomes]
rs4747532	1.00[ASN][1000 genomes]
rs4747533	1.00[ASN][1000 genomes]
rs4749050	1.00[ASN][1000 genomes]
rs5004466	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55945306	1.00[ASN][1000 genomes]
rs58949541	1.00[ASN][1000 genomes]
rs59190298	1.00[ASN][1000 genomes]
rs6482497	1.00[ASN][1000 genomes]
rs6482498	1.00[ASN][1000 genomes]
rs702978	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs702979	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091731	1.00[ASN][1000 genomes]
rs7904866	1.00[ASN][1000 genomes]
rs7921299	1.00[ASN][1000 genomes]
rs7921635	1.00[ASN][1000 genomes]
rs824606	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824611	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824612	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs866089	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs866869	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25755000-25757200	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25755400-25757800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:25755600-25756800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:25755800-25756800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:25755800-25757400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:25755800-25757800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:25756000-25756800	Weak transcription	Placenta	Placenta
8	chr10:25756400-25757400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:25756400-25758200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:25756400-25758200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:25756600-25756800	Enhancers	K562	blood
12	chr10:25756600-25758000	Enhancers	HUES6 Cell Line	embryonic stem cell

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