Variant report

Variant	rs5004466
Chromosome Location	chr10:25767840-25767841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1329254	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1360124	0.83[EUR][1000 genomes]
rs1410930	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1547685	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1773635	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1928364	0.82[EUR][1000 genomes]
rs2480346	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2987837	0.83[EUR][1000 genomes]
rs3005188	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3005190	0.80[EUR][1000 genomes]
rs3005192	0.83[EUR][1000 genomes]
rs3118971	0.82[AMR][1000 genomes]
rs702979	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs824606	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs824611	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs824612	0.85[EUR][1000 genomes]
rs866089	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs866869	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25756800-25775000	Weak transcription	K562	blood
2	chr10:25757200-25769600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25765800-25770000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:25765800-25782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links