Variant report

Variant	rs1329250
Chromosome Location	chr10:25740199-25740200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10764555	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014622	1.00[ASN][1000 genomes]
rs11014623	1.00[ASN][1000 genomes]
rs11014625	1.00[ASN][1000 genomes]
rs12355530	1.00[ASN][1000 genomes]
rs12357174	1.00[ASN][1000 genomes]
rs1329249	0.91[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329254	1.00[ASN][1000 genomes]
rs1335197	1.00[ASN][1000 genomes]
rs1360124	1.00[ASN][1000 genomes]
rs1410930	1.00[ASN][1000 genomes]
rs1547685	1.00[ASN][1000 genomes]
rs17557337	1.00[ASN][1000 genomes]
rs17557638	1.00[ASN][1000 genomes]
rs1773635	1.00[ASN][1000 genomes]
rs1928364	1.00[ASN][1000 genomes]
rs1954261	0.87[CEU][hapmap]
rs1999111	1.00[ASN][1000 genomes]
rs2050975	0.86[CEU][hapmap]
rs2480346	1.00[ASN][1000 genomes]
rs2480350	1.00[ASN][1000 genomes]
rs2987837	1.00[ASN][1000 genomes]
rs3005186	1.00[ASN][1000 genomes]
rs3005188	1.00[ASN][1000 genomes]
rs3005190	1.00[ASN][1000 genomes]
rs3005192	1.00[ASN][1000 genomes]
rs3118971	1.00[ASN][1000 genomes]
rs4237372	1.00[ASN][1000 genomes]
rs4237374	1.00[ASN][1000 genomes]
rs4523593	1.00[ASN][1000 genomes]
rs4747521	0.83[CEU][hapmap]
rs4747532	1.00[ASN][1000 genomes]
rs4747533	1.00[ASN][1000 genomes]
rs4749050	1.00[ASN][1000 genomes]
rs55945306	1.00[ASN][1000 genomes]
rs6482497	1.00[ASN][1000 genomes]
rs6482498	1.00[ASN][1000 genomes]
rs702979	1.00[ASN][1000 genomes]
rs7091731	1.00[ASN][1000 genomes]
rs7904866	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs7921299	1.00[ASN][1000 genomes]
rs7921635	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs824606	1.00[ASN][1000 genomes]
rs824611	1.00[ASN][1000 genomes]
rs866089	1.00[ASN][1000 genomes]
rs866869	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25737800-25741800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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