Variant report
| Variant | nsv521776 |
|---|---|
| Chromosome Location | chr10:25966369-25966730 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs6482511 | chr10:25966369-25966370 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
| 2 | rs370711668 | chr10:25966457-25966458 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs185969391 | chr10:25966476-25966477 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs76607616 | chr10:25966497-25966498 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs547803786 | chr10:25966557-25966558 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs528703002 | chr10:25966605-25966606 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs189011905 | chr10:25966616-25966617 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs2442831 | chr10:25966632-25966633 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs139278660 | chr10:25966637-25966638 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs116068519 | chr10:25966655-25966656 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs181064924 | chr10:25966675-25966676 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs7070879 | chr10:25966730-25966731 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Variant related diseases (count:39)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Behavioral abnormalities | 21522184 | CNVD |
| Dysmorphic features | 21522184 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Autism | 21439084 | CNVD |
| Maculopathy | 20981449 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Glioblastoma multiforme | 21525872 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25962800-25993600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
