Variant report

Variant	rs7076933
Chromosome Location	chr10:25968668-25968669
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25968329..25970638-chr10:25971632..25973181,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10828844	1.00[ASN][1000 genomes]
rs10828845	0.95[ASN][1000 genomes]
rs10828846	0.95[ASN][1000 genomes]
rs10828847	0.95[ASN][1000 genomes]
rs11014619	0.82[JPT][hapmap]
rs16926129	0.82[JPT][hapmap]
rs16926240	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926262	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16926264	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17737307	0.90[ASN][1000 genomes]
rs2290167	0.82[CHB][hapmap]
rs2367979	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4747531	0.82[JPT][hapmap]
rs4749059	1.00[ASN][1000 genomes]
rs55752620	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61613087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61846904	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61846907	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61846908	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62000980	0.93[ASN][1000 genomes]
rs6482509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070879	0.92[AFR][1000 genomes]
rs7080019	0.95[ASN][1000 genomes]
rs7094086	0.91[AFR][1000 genomes]
rs7095138	0.88[AFR][1000 genomes]
rs7098875	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099100	0.89[AFR][1000 genomes]
rs7099373	0.95[ASN][1000 genomes]
rs72796368	0.98[ASN][1000 genomes]
rs72796380	0.98[ASN][1000 genomes]
rs73610338	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7906914	0.88[AFR][1000 genomes]
rs7916640	0.92[ASN][1000 genomes]
rs9664692	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044482	chr10:25889919-25977270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25962800-25993600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:25968000-25970400	Enhancers	Cortex derived primary cultured neurospheres	brain

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