Variant report

Variant	rs17556478
Chromosome Location	chr10:25845754-25845755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25821157..25824087-chr10:25844116..25846156,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10508698	1.00[JPT][hapmap]
rs11014592	1.00[JPT][hapmap]
rs11014593	1.00[JPT][hapmap]
rs11014597	0.93[ASN][1000 genomes]
rs11014611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014619	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs11014625	0.80[MKK][hapmap]
rs11591807	1.00[JPT][hapmap]
rs12770279	0.91[ASN][1000 genomes]
rs12780774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17557021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152214	0.82[ASW][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs34832714	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35018399	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35488334	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35650576	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4145858	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4237374	0.80[MKK][hapmap]
rs4316420	1.00[JPT][hapmap]
rs4604775	0.91[ASN][1000 genomes]
rs4747531	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4749050	0.80[MKK][hapmap]
rs6482495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72788296	0.98[ASN][1000 genomes]
rs7902586	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7903336	0.80[CEU][hapmap]
rs9645526	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983089	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs983090	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv550227	chr10:25843019-25865744	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25843000-25847200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:25843600-25846400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:25844800-25846600	Enhancers	HUVEC	blood vessel
4	chr10:25844800-25846600	Enhancers	NH-A	brain
5	chr10:25845000-25845800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:25845000-25845800	Enhancers	K562	blood
7	chr10:25845000-25846400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:25845000-25846400	Enhancers	Fetal Stomach	stomach
9	chr10:25845000-25846600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:25845200-25845800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:25845200-25845800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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