Variant report

Variant	rs11014592
Chromosome Location	chr10:25810704-25810705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10508698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11014579	1.00[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs11014588	0.91[ASN][1000 genomes]
rs11014593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014611	1.00[JPT][hapmap]
rs11014627	0.82[CEU][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap]
rs11591807	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12780774	1.00[JPT][hapmap]
rs1329248	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1335198	1.00[JPT][hapmap]
rs16926123	0.82[CEU][hapmap];0.92[GIH][hapmap];0.88[TSI][hapmap]
rs16926129	0.82[CEU][hapmap]
rs17556478	1.00[JPT][hapmap]
rs17557021	1.00[JPT][hapmap]
rs1855674	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152214	1.00[JPT][hapmap]
rs34229386	1.00[ASN][1000 genomes]
rs35075874	0.94[ASN][1000 genomes]
rs4145858	1.00[JPT][hapmap]
rs4316420	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482495	1.00[JPT][hapmap]
rs67192203	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7090929	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7093822	1.00[ASN][1000 genomes]
rs72788296	0.83[EUR][1000 genomes]
rs7902586	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25792800-25811600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25810600-25812200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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