Variant report

Variant	rs72788296
Chromosome Location	chr10:25851525-25851526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10508698	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11014592	0.83[EUR][1000 genomes]
rs11014593	0.83[EUR][1000 genomes]
rs11014597	0.91[ASN][1000 genomes]
rs11014611	0.98[ASN][1000 genomes]
rs11014627	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12251283	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12259380	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12770279	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12770280	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12773640	0.85[AMR][1000 genomes]
rs12780774	0.98[ASN][1000 genomes]
rs1329248	0.83[EUR][1000 genomes]
rs1335198	0.95[ASN][1000 genomes]
rs16926123	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16926129	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17556478	0.98[ASN][1000 genomes]
rs17557021	0.98[ASN][1000 genomes]
rs1855674	0.83[EUR][1000 genomes]
rs2152214	0.89[ASN][1000 genomes]
rs34136900	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34165831	0.87[AMR][1000 genomes]
rs34178991	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34372366	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34495386	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34703667	0.85[AMR][1000 genomes]
rs34832714	0.98[ASN][1000 genomes]
rs35018399	0.95[ASN][1000 genomes]
rs35387923	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35488334	0.95[ASN][1000 genomes]
rs35600435	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35650576	0.91[ASN][1000 genomes]
rs4145858	0.95[ASN][1000 genomes]
rs4316420	0.83[EUR][1000 genomes]
rs4604775	0.88[ASN][1000 genomes]
rs59110794	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61400980	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6482495	0.98[ASN][1000 genomes]
rs67192203	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7090929	0.83[EUR][1000 genomes]
rs71495470	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72790307	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72796333	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7902586	0.83[EUR][1000 genomes]
rs9645526	0.98[ASN][1000 genomes]
rs983089	0.91[ASN][1000 genomes]
rs983090	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv550227	chr10:25843019-25865744	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv894972	chr10:25849998-25917909	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25847200-25861200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25850800-25853400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:25851000-25854400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:25851200-25854400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:25851200-25854400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:25851400-25853400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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