Variant report

Variant	rs35650576
Chromosome Location	chr10:25833267-25833268
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11014597	0.91[ASN][1000 genomes]
rs11014611	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12221280	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12770279	0.89[ASN][1000 genomes]
rs12780774	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1335198	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17556478	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17557021	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2152214	0.89[ASN][1000 genomes]
rs34832714	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35018399	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35488334	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4145858	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4604775	0.89[ASN][1000 genomes]
rs6482495	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72788296	0.91[ASN][1000 genomes]
rs9645526	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs983089	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs983090	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25820000-25836800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:25826000-25834600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25832800-25833400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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