Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25823065..25825573-chr10:25861893..25863444,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10508698	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11014579	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11014592	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs11014593	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs11014611	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11014627	0.82[CEU][hapmap]
rs11591807	1.00[JPT][hapmap]
rs12780774	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1329248	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1335198	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16926123	0.82[CEU][hapmap]
rs16926129	0.85[CEU][hapmap]
rs16926165	0.82[CEU][hapmap]
rs17556478	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17557021	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1855674	0.96[EUR][1000 genomes]
rs2152214	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4145858	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4316420	0.85[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs6482495	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs67192203	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7090929	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs72788296	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25820000-25836800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:25824400-25825000	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search: