Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:25811568..25812567-chr10:25927033..25928066,5	MCF-7	breast:
2	chr10:25811744..25812457-chr10:25926562..25927514,2	MCF-7	breast:
3	chr10:25810786..25813575-chr10:25815912..25817946,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10508694	0.85[LWK][hapmap]
rs10508698	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11014588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11014592	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11014593	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11014611	1.00[JPT][hapmap]
rs12356315	0.85[LWK][hapmap]
rs12780774	1.00[JPT][hapmap]
rs1329248	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1335198	1.00[JPT][hapmap]
rs17556478	1.00[JPT][hapmap]
rs17557021	1.00[JPT][hapmap]
rs1855674	1.00[ASN][1000 genomes]
rs2152214	1.00[JPT][hapmap]
rs34229386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35075874	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4145858	1.00[JPT][hapmap]
rs4316420	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6482495	1.00[JPT][hapmap]
rs67192203	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7093822	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902586	1.00[JPT][hapmap]
rs7911892	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11591807	GPR158	cis	parietal	SCAN
rs11591807	ARMC3	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25811600-25812800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
2	chr10:25812000-25812400	Enhancers	Gastric	stomach
3	chr10:25812200-25812400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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