Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25724129..25726699-chr10:25734442..25736965,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10399962	0.83[CEU][hapmap]
rs10508694	1.00[LWK][hapmap]
rs10764543	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs10828793	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs10828807	0.83[CEU][hapmap]
rs11014530	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs11014553	0.83[CEU][hapmap]
rs11014554	0.83[CEU][hapmap]
rs11014559	0.83[CEU][hapmap]
rs11014561	0.93[EUR][1000 genomes]
rs11014564	0.94[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap]
rs11591807	0.85[LWK][hapmap]
rs12259043	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs12259696	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs12358447	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs12762462	0.83[LWK][hapmap]
rs12764415	0.94[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs12765005	0.94[CEU][hapmap];0.89[JPT][hapmap]
rs12770990	0.94[CEU][hapmap];0.89[JPT][hapmap];0.91[TSI][hapmap]
rs12773262	0.87[CEU][hapmap]
rs1340002	0.83[LWK][hapmap];0.85[MKK][hapmap]
rs1341963	0.85[LWK][hapmap]
rs16925850	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs16925877	0.94[CEU][hapmap];0.89[JPT][hapmap]
rs4431923	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12356315	GPR158	cis	cerebellum	SCAN
rs12356315	APBB1IP	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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