Variant report

Variant	rs11014561
Chromosome Location	chr10:25731770-25731771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10399962	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741087	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764543	0.89[EUR][1000 genomes]
rs10828793	0.89[EUR][1000 genomes]
rs11014510	0.84[AMR][1000 genomes]
rs11014530	0.89[EUR][1000 genomes]
rs11014558	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11014559	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014560	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259043	0.89[EUR][1000 genomes]
rs12259696	0.87[EUR][1000 genomes]
rs12358447	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925850	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2761584	chr10:25727933-25732659	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25730400-25731800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr10:25731200-25731800	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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