Variant report
| Variant | rs4316420 |
|---|---|
| Chromosome Location | chr10:25817226-25817227 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10508698 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11014579 | 0.82[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs11014588 | 0.91[ASN][1000 genomes] |
| rs11014592 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11014593 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11014611 | 1.00[JPT][hapmap] |
| rs11591807 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12780774 | 1.00[JPT][hapmap] |
| rs1329248 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1335198 | 1.00[JPT][hapmap] |
| rs17556478 | 1.00[JPT][hapmap] |
| rs17557021 | 1.00[JPT][hapmap] |
| rs1855674 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2152214 | 1.00[JPT][hapmap] |
| rs34229386 | 1.00[ASN][1000 genomes] |
| rs35075874 | 0.94[ASN][1000 genomes] |
| rs4145858 | 1.00[JPT][hapmap] |
| rs6482495 | 1.00[JPT][hapmap] |
| rs67192203 | 0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7090929 | 0.82[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7093822 | 1.00[ASN][1000 genomes] |
| rs72788296 | 0.83[EUR][1000 genomes] |
| rs7902586 | 0.85[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349863 | chr10:25614571-25946379 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25812800-25824200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
