Variant report

Variant	rs17628278
Chromosome Location	chr10:25730480-25730481
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10450325	1.00[CHB][hapmap]
rs10508693	1.00[CHB][hapmap]
rs11014507	1.00[CHB][hapmap]
rs12265226	1.00[CHB][hapmap]
rs12357174	1.00[CHB][hapmap]
rs1335195	1.00[CHB][hapmap]
rs1335196	1.00[CHB][hapmap]
rs1335197	1.00[CHB][hapmap]
rs16926124	1.00[CHB][hapmap]
rs16926153	1.00[CHB][hapmap]
rs16926172	1.00[CHB][hapmap]
rs2026055	1.00[CHB][hapmap]
rs4523593	1.00[CHB][hapmap]
rs4747532	1.00[CHB][hapmap]
rs6482497	1.00[CHB][hapmap]
rs6482498	1.00[CHB][hapmap]
rs6482499	1.00[CHB][hapmap]
rs72782132	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7911892	1.00[CHB][hapmap]
rs7921299	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2761584	chr10:25727933-25732659	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25728400-25731200	Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr10:25729000-25730800	Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr10:25729400-25730600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:25730000-25730600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:25730000-25730600	Enhancers	Fetal Heart	heart
6	chr10:25730200-25731200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:25730400-25731200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:25730400-25731200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr10:25730400-25731800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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