Variant report

Variant	rs1773691
Chromosome Location	chr10:25702556-25702557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10508693	0.92[LWK][hapmap];0.91[YRI][hapmap]
rs10828777	0.87[MEX][hapmap]
rs1094830	0.85[CHD][hapmap]
rs11014545	1.00[CHD][hapmap]
rs1148154	0.87[MEX][hapmap]
rs1341965	0.96[CEU][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1341968	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1361636	0.87[CHD][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap]
rs1754268	0.81[AMR][1000 genomes]
rs1773634	1.00[CHD][hapmap]
rs2026055	0.88[LWK][hapmap];0.91[YRI][hapmap]
rs4749026	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs824593	0.85[AMR][1000 genomes]
rs824595	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25701400-25705200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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