Variant report

Variant	rs1148154
Chromosome Location	chr10:25654747-25654748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 185 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs10399962	0.93[JPT][hapmap]
rs10508694	1.00[JPT][hapmap]
rs10741075	0.86[GIH][hapmap];0.86[JPT][hapmap]
rs10741077	1.00[JPT][hapmap]
rs10741085	0.83[CEU][hapmap]
rs10764539	1.00[JPT][hapmap]
rs10764543	1.00[JPT][hapmap]
rs10764548	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs10828770	0.83[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap]
rs10828774	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10828775	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10828777	0.94[ASW][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap]
rs10828778	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10828791	1.00[JPT][hapmap]
rs10828792	1.00[JPT][hapmap]
rs10828793	1.00[JPT][hapmap]
rs10828800	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs10828807	0.93[JPT][hapmap]
rs11014510	0.82[ASN][1000 genomes]
rs11014527	0.93[JPT][hapmap]
rs11014528	1.00[JPT][hapmap]
rs11014529	1.00[JPT][hapmap]
rs11014530	1.00[JPT][hapmap]
rs11014550	1.00[JPT][hapmap]
rs11014552	0.83[CEU][hapmap]
rs11014553	1.00[JPT][hapmap]
rs11014554	1.00[JPT][hapmap]
rs11014558	0.93[JPT][hapmap]
rs11014559	0.93[JPT][hapmap]
rs1122775	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1122776	0.92[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1148155	0.89[CEU][hapmap]
rs11818261	1.00[JPT][hapmap]
rs12219956	0.82[ASN][1000 genomes]
rs12240665	1.00[JPT][hapmap]
rs12249852	1.00[JPT][hapmap]
rs12251868	1.00[JPT][hapmap]
rs12251917	1.00[JPT][hapmap]
rs12254479	1.00[JPT][hapmap]
rs12256851	1.00[JPT][hapmap]
rs12258671	1.00[JPT][hapmap]
rs12259043	1.00[JPT][hapmap]
rs12259696	1.00[JPT][hapmap]
rs12358447	1.00[JPT][hapmap]
rs12762462	1.00[JPT][hapmap]
rs12773262	1.00[JPT][hapmap]
rs1329259	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1329263	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1329264	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1329265	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1329267	0.83[CEU][hapmap]
rs1340002	0.93[JPT][hapmap]
rs1341961	0.82[CEU][hapmap]
rs1341962	0.82[CEU][hapmap]
rs1341963	0.83[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1341964	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1341966	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1361633	0.83[CEU][hapmap]
rs1410932	1.00[JPT][hapmap]
rs1413397	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1418126	0.83[CEU][hapmap]
rs1418129	0.83[CEU][hapmap]
rs1576317	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1576318	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1576320	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1576321	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1590836	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1591249	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1591250	0.84[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1612200	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1612726	0.83[TSI][hapmap]
rs1626372	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1628986	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1630323	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1632593	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16925850	0.86[JPT][hapmap]
rs1754246	0.83[CEU][hapmap]
rs1754248	0.83[TSI][hapmap]
rs1754251	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1754253	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.92[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754254	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754255	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754256	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754257	0.82[ASN][1000 genomes]
rs1754258	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754260	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754264	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754265	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754268	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754269	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1754270	0.83[CEU][hapmap]
rs1754271	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1754277	0.83[CEU][hapmap]
rs1754281	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs1760716	0.85[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1760718	0.84[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1760726	0.82[ASN][1000 genomes]
rs1760727	0.92[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760728	0.92[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760729	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760730	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760733	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760734	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760735	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760755	0.90[ASN][1000 genomes]
rs1760758	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1760759	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1760762	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1760763	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760764	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760765	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1760766	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1760767	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap]
rs1773607	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773608	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773609	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773612	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1773614	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773616	0.92[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773617	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1773618	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773622	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773623	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773625	1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap]
rs1773648	0.90[ASN][1000 genomes]
rs1773649	0.89[CEU][hapmap];0.80[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1773650	0.80[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1773651	0.90[ASN][1000 genomes]
rs1773658	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs1773663	0.83[CEU][hapmap]
rs1773678	0.83[TSI][hapmap]
rs1773682	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs1773688	0.83[CEU][hapmap]
rs1773689	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1773690	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1773691	0.87[MEX][hapmap]
rs1855461	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2262989	0.90[ASN][1000 genomes]
rs2480351	0.83[CEU][hapmap]
rs2795044	0.84[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2807245	0.91[ASN][1000 genomes]
rs2807247	0.87[ASN][1000 genomes]
rs2807248	0.83[CEU][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2807253	0.83[CHD][hapmap];0.93[JPT][hapmap]
rs2807255	0.84[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3949311	0.86[TSI][hapmap]
rs4271295	0.83[CEU][hapmap]
rs4351726	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4431923	1.00[JPT][hapmap]
rs4749022	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs476972	0.90[ASN][1000 genomes]
rs489052	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs489186	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs495338	0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[ASN][1000 genomes]
rs495456	0.94[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs509285	0.94[CEU][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs516071	0.94[CEU][hapmap];0.80[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[ASN][1000 genomes]
rs518751	0.88[ASN][1000 genomes]
rs532538	0.83[CEU][hapmap]
rs541206	0.89[CEU][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs543850	0.80[CHD][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap]
rs558947	0.86[JPT][hapmap]
rs573812	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7079892	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7091686	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7094439	1.00[JPT][hapmap]
rs722537	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs7392687	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs824145	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs824146	0.89[CEU][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs824590	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs824592	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs824593	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs824594	0.83[CEU][hapmap]
rs824597	0.92[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824598	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824599	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs862192	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs956085	0.83[CEU][hapmap]
rs956086	0.83[CEU][hapmap];0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3342880	chr10:25644995-25682820	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550225	chr10:25653017-25671382	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv550226	chr10:25653017-25693426	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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