Variant report

Variant	rs1773651
Chromosome Location	chr10:25636425-25636426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25606928..25608702-chr10:25636326..25639003,2	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10741075	0.88[ASN][1000 genomes]
rs10828770	0.89[ASN][1000 genomes]
rs11014490	0.89[ASN][1000 genomes]
rs1122775	0.84[ASN][1000 genomes]
rs1122776	0.84[ASN][1000 genomes]
rs1245966	0.89[ASN][1000 genomes]
rs1245967	0.89[ASN][1000 genomes]
rs1329264	0.84[ASN][1000 genomes]
rs1329265	0.84[ASN][1000 genomes]
rs1341963	0.83[ASN][1000 genomes]
rs1341966	0.94[ASN][1000 genomes]
rs1413397	0.84[ASN][1000 genomes]
rs1576317	0.84[ASN][1000 genomes]
rs1576318	0.82[ASN][1000 genomes]
rs1576320	0.84[ASN][1000 genomes]
rs1576321	0.84[ASN][1000 genomes]
rs1591249	0.84[ASN][1000 genomes]
rs1612200	0.84[ASN][1000 genomes]
rs1626372	0.84[ASN][1000 genomes]
rs1628986	0.84[ASN][1000 genomes]
rs1630323	0.84[ASN][1000 genomes]
rs1632593	0.84[ASN][1000 genomes]
rs1754253	0.84[ASN][1000 genomes]
rs1754254	0.84[ASN][1000 genomes]
rs1754255	0.84[ASN][1000 genomes]
rs1754256	0.84[ASN][1000 genomes]
rs1754258	0.84[ASN][1000 genomes]
rs1754260	0.84[ASN][1000 genomes]
rs1754264	0.84[ASN][1000 genomes]
rs1754265	0.84[ASN][1000 genomes]
rs1754268	0.84[ASN][1000 genomes]
rs1754269	0.84[ASN][1000 genomes]
rs1754271	0.83[ASN][1000 genomes]
rs1760716	0.94[ASN][1000 genomes]
rs1760718	0.84[ASN][1000 genomes]
rs1760727	0.84[ASN][1000 genomes]
rs1760728	0.84[ASN][1000 genomes]
rs1760729	0.84[ASN][1000 genomes]
rs1760730	0.84[ASN][1000 genomes]
rs1760733	0.84[ASN][1000 genomes]
rs1760734	0.84[ASN][1000 genomes]
rs1760735	0.84[ASN][1000 genomes]
rs1760755	1.00[ASN][1000 genomes]
rs1760758	0.94[ASN][1000 genomes]
rs1760759	0.94[ASN][1000 genomes]
rs1760762	0.80[ASN][1000 genomes]
rs1760763	0.84[ASN][1000 genomes]
rs1760764	0.84[ASN][1000 genomes]
rs1760765	0.84[ASN][1000 genomes]
rs1773607	0.84[ASN][1000 genomes]
rs1773608	0.84[ASN][1000 genomes]
rs1773609	0.84[ASN][1000 genomes]
rs1773612	0.83[ASN][1000 genomes]
rs1773614	0.84[ASN][1000 genomes]
rs1773616	0.84[ASN][1000 genomes]
rs1773618	0.84[ASN][1000 genomes]
rs1773622	0.84[ASN][1000 genomes]
rs1773623	0.84[ASN][1000 genomes]
rs1773648	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1773649	0.99[ASN][1000 genomes]
rs1773650	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1773689	0.83[ASN][1000 genomes]
rs1773690	0.83[ASN][1000 genomes]
rs2262989	0.98[ASN][1000 genomes]
rs2795044	0.84[ASN][1000 genomes]
rs2807245	0.99[ASN][1000 genomes]
rs2807247	0.94[ASN][1000 genomes]
rs2807248	0.92[ASN][1000 genomes]
rs2807253	0.89[ASN][1000 genomes]
rs2807255	0.84[ASN][1000 genomes]
rs4351726	0.84[ASN][1000 genomes]
rs4423091	0.87[ASN][1000 genomes]
rs476972	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs489052	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs489186	0.99[ASN][1000 genomes]
rs495338	0.99[ASN][1000 genomes]
rs495456	0.99[ASN][1000 genomes]
rs516071	0.99[ASN][1000 genomes]
rs518751	0.95[ASN][1000 genomes]
rs532538	0.86[ASN][1000 genomes]
rs541206	0.99[ASN][1000 genomes]
rs573812	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs578033	0.89[ASN][1000 genomes]
rs7091686	0.84[ASN][1000 genomes]
rs7100128	0.87[ASN][1000 genomes]
rs7922827	0.85[ASN][1000 genomes]
rs824145	0.88[ASN][1000 genomes]
rs824146	0.88[ASN][1000 genomes]
rs824590	0.84[ASN][1000 genomes]
rs824593	0.84[ASN][1000 genomes]
rs824597	0.83[ASN][1000 genomes]
rs824598	0.83[ASN][1000 genomes]
rs824599	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3371273	chr10:25636346-25640744	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25632400-25642600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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