Variant report

Variant	rs489186
Chromosome Location	chr10:25632180-25632181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25630908..25632833-chr10:25633483..25635997,2	MCF-7	breast:

Extended variants
information (count: 158 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10399962	0.87[JPT][hapmap]
rs10508694	1.00[JPT][hapmap]
rs10741075	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs10741077	1.00[JPT][hapmap]
rs10764539	1.00[JPT][hapmap]
rs10764543	1.00[JPT][hapmap]
rs10828770	0.93[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs10828774	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10828775	1.00[JPT][hapmap]
rs10828777	1.00[JPT][hapmap]
rs10828778	1.00[JPT][hapmap]
rs10828791	1.00[JPT][hapmap]
rs10828792	1.00[JPT][hapmap]
rs10828793	1.00[JPT][hapmap]
rs10828807	0.87[JPT][hapmap]
rs11014490	0.88[ASN][1000 genomes]
rs11014527	0.93[JPT][hapmap]
rs11014528	1.00[JPT][hapmap]
rs11014529	1.00[JPT][hapmap]
rs11014530	1.00[JPT][hapmap]
rs11014550	1.00[JPT][hapmap]
rs11014553	1.00[JPT][hapmap]
rs11014554	1.00[JPT][hapmap]
rs11014558	0.93[JPT][hapmap]
rs11014559	0.87[JPT][hapmap]
rs1122775	0.85[ASN][1000 genomes]
rs1122776	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1148154	1.00[JPT][hapmap]
rs11818261	1.00[JPT][hapmap]
rs12240665	1.00[JPT][hapmap]
rs12249852	1.00[JPT][hapmap]
rs12251868	1.00[JPT][hapmap]
rs12251917	1.00[JPT][hapmap]
rs12254479	1.00[JPT][hapmap]
rs12256851	1.00[JPT][hapmap]
rs12258671	1.00[JPT][hapmap]
rs12259043	1.00[JPT][hapmap]
rs12259696	1.00[JPT][hapmap]
rs12358447	1.00[JPT][hapmap]
rs1245966	0.88[ASN][1000 genomes]
rs1245967	0.88[ASN][1000 genomes]
rs12762462	1.00[JPT][hapmap]
rs12773262	1.00[JPT][hapmap]
rs1329259	1.00[JPT][hapmap]
rs1329263	1.00[JPT][hapmap]
rs1329264	0.85[ASN][1000 genomes]
rs1329265	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1340002	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs1341963	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1341964	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs1341966	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1410932	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs1413397	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1576317	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1576318	0.83[ASN][1000 genomes]
rs1576320	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs1576321	0.85[ASN][1000 genomes]
rs1590836	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs1591249	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1591250	0.93[JPT][hapmap]
rs1612200	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1626372	0.85[ASN][1000 genomes]
rs1628986	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1630323	0.85[ASN][1000 genomes]
rs1632593	0.85[ASN][1000 genomes]
rs16925850	0.88[JPT][hapmap]
rs1754251	1.00[JPT][hapmap]
rs1754253	0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs1754254	0.85[ASN][1000 genomes]
rs1754255	0.85[ASN][1000 genomes]
rs1754256	0.85[ASN][1000 genomes]
rs1754258	0.85[ASN][1000 genomes]
rs1754260	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1754264	0.85[ASN][1000 genomes]
rs1754265	0.85[ASN][1000 genomes]
rs1754268	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1754269	0.85[ASN][1000 genomes]
rs1754271	0.84[ASN][1000 genomes]
rs1760716	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1760718	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1760727	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1760728	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1760729	0.85[ASN][1000 genomes]
rs1760730	0.85[ASN][1000 genomes]
rs1760733	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1760734	0.85[ASN][1000 genomes]
rs1760735	0.85[ASN][1000 genomes]
rs1760755	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1760758	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1760759	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1760762	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1760763	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1760764	0.85[ASN][1000 genomes]
rs1760765	0.85[ASN][1000 genomes]
rs1760766	1.00[JPT][hapmap]
rs1760767	1.00[JPT][hapmap]
rs1773607	0.85[ASN][1000 genomes]
rs1773608	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773609	0.85[ASN][1000 genomes]
rs1773612	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1773614	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773616	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773617	1.00[JPT][hapmap]
rs1773618	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773622	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773623	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773625	0.93[JPT][hapmap]
rs1773648	0.99[ASN][1000 genomes]
rs1773649	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1773650	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1773651	0.99[ASN][1000 genomes]
rs1773689	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1773690	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1812401	0.93[CHB][hapmap]
rs1855461	1.00[JPT][hapmap]
rs2262989	0.99[ASN][1000 genomes]
rs2795044	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2807245	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2807247	0.95[ASN][1000 genomes]
rs2807248	0.93[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs2807250	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2807253	0.93[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2807255	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4351726	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4423091	0.86[ASN][1000 genomes]
rs4431923	1.00[JPT][hapmap]
rs476972	0.99[ASN][1000 genomes]
rs489052	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs495338	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs495456	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs509285	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs516071	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs518751	0.97[ASN][1000 genomes]
rs532538	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs541206	0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs543850	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs558947	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs573812	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs578033	0.88[ASN][1000 genomes]
rs7079892	1.00[JPT][hapmap]
rs7091686	0.85[ASN][1000 genomes]
rs7094439	1.00[JPT][hapmap]
rs7100128	0.86[ASN][1000 genomes]
rs722537	0.87[JPT][hapmap]
rs7922827	0.84[ASN][1000 genomes]
rs824144	0.88[CHB][hapmap]
rs824145	0.93[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs824146	0.93[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs824147	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs824590	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs824592	1.00[JPT][hapmap]
rs824593	0.85[ASN][1000 genomes]
rs824597	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs824598	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs824599	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs862192	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25631200-25632400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:25631800-25632200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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