Variant report

Variant	rs2807250
Chromosome Location	chr10:25601033-25601034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10741075	0.90[ASN][1000 genomes]
rs10828770	0.93[CHB][hapmap];0.90[CHD][hapmap];0.89[ASN][1000 genomes]
rs10828774	0.84[CHB][hapmap]
rs11014490	0.89[ASN][1000 genomes]
rs11014527	0.87[JPT][hapmap]
rs1245966	0.89[ASN][1000 genomes]
rs1245967	0.89[ASN][1000 genomes]
rs12762462	0.83[LWK][hapmap]
rs1340002	0.85[CHB][hapmap];0.83[LWK][hapmap]
rs1341963	0.92[CEU][hapmap];0.85[CHB][hapmap];0.84[GIH][hapmap];0.85[LWK][hapmap];0.89[MEX][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap]
rs1341966	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs1760716	0.85[CHB][hapmap];0.80[CHD][hapmap];0.83[ASN][1000 genomes]
rs1760755	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760758	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs1760759	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs1773648	0.87[ASN][1000 genomes]
rs1773649	0.93[CHB][hapmap];0.87[CHD][hapmap];0.88[ASN][1000 genomes]
rs1773650	0.93[CHB][hapmap];0.87[CHD][hapmap];0.88[ASN][1000 genomes]
rs1773651	0.89[ASN][1000 genomes]
rs1773689	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs1773690	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs1812401	0.92[CHB][hapmap]
rs2262989	0.87[ASN][1000 genomes]
rs2795044	0.81[CHD][hapmap]
rs2807245	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2807247	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2807248	0.93[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs2807253	0.93[CHB][hapmap];0.90[CHD][hapmap];0.89[ASN][1000 genomes]
rs4423091	0.91[ASN][1000 genomes]
rs476972	0.87[ASN][1000 genomes]
rs489052	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs489186	1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs495338	0.93[CHB][hapmap];0.83[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs495456	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs509285	0.93[CHB][hapmap];0.90[CHD][hapmap]
rs516071	0.93[CHB][hapmap];0.87[CHD][hapmap];0.88[ASN][1000 genomes]
rs518751	0.84[ASN][1000 genomes]
rs532538	0.86[CHB][hapmap];0.94[ASN][1000 genomes]
rs541206	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs543850	0.93[CHB][hapmap];0.87[CHD][hapmap]
rs558947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs573812	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs578033	0.89[ASN][1000 genomes]
rs7100128	0.95[ASN][1000 genomes]
rs7922827	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs824144	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs824145	0.93[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs824146	0.93[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs824147	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs824599	0.92[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2807250	BAMBI	cis	parietal	SCAN
rs2807250	APBB1IP	cis	cerebellum	SCAN
rs2807250	YME1L1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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