Variant report

Variant	rs1245966
Chromosome Location	chr10:25582586-25582587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10741075	0.99[ASN][1000 genomes]
rs10828770	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11014490	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1245967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341966	0.84[ASN][1000 genomes]
rs1760716	0.84[ASN][1000 genomes]
rs1760755	0.89[ASN][1000 genomes]
rs1760758	0.84[ASN][1000 genomes]
rs1760759	0.84[ASN][1000 genomes]
rs1773648	0.87[ASN][1000 genomes]
rs1773649	0.88[ASN][1000 genomes]
rs1773650	0.88[ASN][1000 genomes]
rs1773651	0.89[ASN][1000 genomes]
rs2262989	0.87[ASN][1000 genomes]
rs2807245	0.88[ASN][1000 genomes]
rs2807247	0.84[ASN][1000 genomes]
rs2807248	0.86[ASN][1000 genomes]
rs2807253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4423091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs476972	0.87[ASN][1000 genomes]
rs489052	0.88[ASN][1000 genomes]
rs489186	0.88[ASN][1000 genomes]
rs495338	0.88[ASN][1000 genomes]
rs495456	0.88[ASN][1000 genomes]
rs516071	0.88[ASN][1000 genomes]
rs518751	0.85[ASN][1000 genomes]
rs532538	0.92[ASN][1000 genomes]
rs541206	0.88[ASN][1000 genomes]
rs573812	0.88[ASN][1000 genomes]
rs578033	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100128	0.93[ASN][1000 genomes]
rs7922827	0.90[ASN][1000 genomes]
rs824145	0.92[ASN][1000 genomes]
rs824146	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25582000-25592000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25582200-25583400	Weak transcription	A549	lung

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