Variant report
| Variant | rs7922827 |
|---|---|
| Chromosome Location | chr10:25586492-25586493 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:25374556..25376666-chr10:25584263..25586779,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10741075 | 0.89[ASN][1000 genomes] |
| rs10828770 | 0.90[ASN][1000 genomes] |
| rs11014490 | 0.90[ASN][1000 genomes] |
| rs1245966 | 0.90[ASN][1000 genomes] |
| rs1245967 | 0.90[ASN][1000 genomes] |
| rs1341966 | 0.80[ASN][1000 genomes] |
| rs1760716 | 0.80[ASN][1000 genomes] |
| rs1760755 | 0.85[ASN][1000 genomes] |
| rs1760758 | 0.80[ASN][1000 genomes] |
| rs1760759 | 0.80[ASN][1000 genomes] |
| rs1773648 | 0.83[ASN][1000 genomes] |
| rs1773649 | 0.84[ASN][1000 genomes] |
| rs1773650 | 0.84[ASN][1000 genomes] |
| rs1773651 | 0.85[ASN][1000 genomes] |
| rs2262989 | 0.83[ASN][1000 genomes] |
| rs2807245 | 0.96[AFR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2807247 | 0.83[AFR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2807248 | 0.91[ASN][1000 genomes] |
| rs2807253 | 0.90[ASN][1000 genomes] |
| rs4423091 | 0.92[ASN][1000 genomes] |
| rs476972 | 0.83[ASN][1000 genomes] |
| rs489052 | 0.84[ASN][1000 genomes] |
| rs489186 | 0.84[ASN][1000 genomes] |
| rs495338 | 0.84[ASN][1000 genomes] |
| rs495456 | 0.84[ASN][1000 genomes] |
| rs516071 | 0.84[ASN][1000 genomes] |
| rs518751 | 0.81[ASN][1000 genomes] |
| rs532538 | 0.95[ASN][1000 genomes] |
| rs541206 | 0.84[ASN][1000 genomes] |
| rs573812 | 0.84[ASN][1000 genomes] |
| rs578033 | 0.90[ASN][1000 genomes] |
| rs7100128 | 0.97[ASN][1000 genomes] |
| rs824145 | 0.98[ASN][1000 genomes] |
| rs824146 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761583 | chr10:25525657-25722444 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25582000-25592000 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
