Variant report

Variant	rs1754253
Chromosome Location	chr10:25671382-25671383
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25670945..25672971-chr10:25675542..25677889,2	K562	blood:

Extended variants
information (count: 186 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:181)

rs_ID	r²[population]
rs10399962	0.83[JPT][hapmap]
rs10508694	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs10741077	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs10741085	0.84[CEU][hapmap]
rs10764539	0.91[JPT][hapmap]
rs10764543	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs10764548	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs10828770	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs10828774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs10828775	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10828777	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.90[LWK][hapmap];0.82[MEX][hapmap];0.98[MKK][hapmap];0.89[YRI][hapmap]
rs10828778	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap]
rs10828791	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs10828792	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs10828793	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs10828800	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs10828807	0.83[JPT][hapmap]
rs11014527	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs11014528	0.84[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs11014529	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs11014530	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs11014550	0.92[JPT][hapmap]
rs11014552	0.84[CEU][hapmap]
rs11014553	0.92[JPT][hapmap]
rs11014554	0.92[JPT][hapmap]
rs11014558	0.83[JPT][hapmap]
rs11014559	0.83[JPT][hapmap]
rs1122775	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1122776	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1148154	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.92[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.84[YRI][hapmap]
rs1148155	0.90[CEU][hapmap]
rs11818261	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12240665	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12249852	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12251868	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12251917	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12254479	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12256778	0.83[ASN][1000 genomes]
rs12256851	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12258359	0.83[ASN][1000 genomes]
rs12258665	0.83[ASN][1000 genomes]
rs12258671	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12259043	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12259696	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12358447	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12762462	0.92[JPT][hapmap]
rs12764320	0.83[ASN][1000 genomes]
rs12766749	0.83[ASN][1000 genomes]
rs12773262	0.92[JPT][hapmap]
rs1329259	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1329263	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1329264	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329265	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329267	0.84[CEU][hapmap]
rs1340002	0.82[JPT][hapmap]
rs1341961	0.83[CEU][hapmap]
rs1341962	0.84[CEU][hapmap]
rs1341963	0.92[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs1341964	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1341966	0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs1361633	0.84[CEU][hapmap]
rs1410932	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs1413397	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs1418126	0.84[CEU][hapmap]
rs1418129	0.84[CEU][hapmap]
rs1576317	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576318	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1576320	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576321	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1590836	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1591249	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591250	0.86[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1612200	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626372	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1628986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1630323	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1632593	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754246	0.84[CEU][hapmap]
rs1754251	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1754254	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754255	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754256	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754257	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1754258	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754260	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754264	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754265	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754268	1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754269	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754270	0.84[CEU][hapmap]
rs1754271	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1754277	0.84[CEU][hapmap]
rs1754281	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs1760716	0.92[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs1760718	0.86[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap]
rs1760726	0.89[ASN][1000 genomes]
rs1760727	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760728	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760729	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760730	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760733	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760734	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760735	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760755	0.84[ASN][1000 genomes]
rs1760758	0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs1760759	0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs1760762	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1760763	1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760764	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760765	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1760767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.97[TSI][hapmap]
rs1773607	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773608	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773609	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773612	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1773614	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773616	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773617	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1773618	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773622	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773623	1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773625	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap];0.97[TSI][hapmap]
rs1773648	0.84[ASN][1000 genomes]
rs1773649	0.89[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773650	0.86[CHB][hapmap];0.90[CHD][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs1773651	0.84[ASN][1000 genomes]
rs1773658	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs1773663	0.84[CEU][hapmap]
rs1773678	0.80[TSI][hapmap]
rs1773682	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs1773688	0.84[CEU][hapmap]
rs1773689	0.92[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs1773690	0.92[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs1812401	0.84[CHB][hapmap]
rs1855461	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2262989	0.84[ASN][1000 genomes]
rs2480351	0.84[CEU][hapmap]
rs2795044	0.86[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap]
rs2807245	0.85[ASN][1000 genomes]
rs2807247	0.80[ASN][1000 genomes]
rs2807248	0.83[CEU][hapmap];0.86[CHB][hapmap]
rs2807253	0.86[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap]
rs2807255	0.86[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap]
rs35663899	0.83[ASN][1000 genomes]
rs35973294	0.83[ASN][1000 genomes]
rs3949311	0.81[TSI][hapmap]
rs4271295	0.84[CEU][hapmap]
rs4351726	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4431923	1.00[JPT][hapmap]
rs4749022	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs476972	0.84[ASN][1000 genomes]
rs489052	0.86[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs489186	0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs495338	0.86[CHB][hapmap];0.86[CHD][hapmap];0.92[JPT][hapmap];0.81[MEX][hapmap];0.85[ASN][1000 genomes]
rs495456	0.95[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs509285	0.94[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.92[JPT][hapmap]
rs516071	0.94[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs518751	0.81[ASN][1000 genomes]
rs532538	0.84[CEU][hapmap]
rs541206	0.90[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs543850	0.86[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap]
rs573812	0.86[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs7079892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs7090972	0.83[ASN][1000 genomes]
rs7091686	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094439	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs722537	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs7392687	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs824145	0.90[CEU][hapmap];0.86[CHB][hapmap]
rs824146	0.89[CEU][hapmap];0.86[CHB][hapmap]
rs824590	1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824592	0.84[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs824593	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824594	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs824597	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs824598	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs824599	0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs862192	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs956085	0.83[CEU][hapmap]
rs956086	0.83[CEU][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3342880	chr10:25644995-25682820	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550225	chr10:25653017-25671382	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv550226	chr10:25653017-25693426	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25670000-25673200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:25670200-25673400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:25670800-25671400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:25670800-25671600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:25670800-25672600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:25671000-25671400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr10:25671000-25677000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:25671200-25671600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:25671200-25672200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:25671200-25672200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:25671200-25672200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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