Variant report

Variant	esv3371273
Chromosome Location	chr10:25636346-25640744
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25606928..25608702-chr10:25636326..25639003,2	MCF-7	breast:

Extended variants
information (count: 171 )
Associated
traits (count: 44 )

Variant overlapped rSNPs/rCNVs (count:171 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11816375	chr10:25636376-25636377	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs554789768	chr10:25636405-25636406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs138383580	chr10:25636409-25636410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs1760755	chr10:25636415-25636416	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs1773651	chr10:25636425-25636426	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs182519473	chr10:25636428-25636429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199719224	chr10:25636429-25636430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs1760757	chr10:25636438-25636439	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs143891427	chr10:25636492-25636493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs544463591	chr10:25636501-25636502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs561556367	chr10:25636518-25636519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs530254507	chr10:25636566-25636567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs150219379	chr10:25636578-25636579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs566582714	chr10:25636729-25636730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs138691566	chr10:25636745-25636746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs187224908	chr10:25636746-25636747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs569166670	chr10:25636784-25636785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs111227766	chr10:25636796-25636797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs143385554	chr10:25636798-25636799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs190661993	chr10:25636826-25636827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs10450325	chr10:25636849-25636850	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
22	rs149354695	chr10:25636918-25636919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs144831320	chr10:25636943-25636944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs373728474	chr10:25636965-25636966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs553382454	chr10:25636966-25636967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs375656949	chr10:25636982-25636983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs546286897	chr10:25637053-25637054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs1760758	chr10:25637069-25637070	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs558562706	chr10:25637174-25637175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs575509310	chr10:25637185-25637186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs182736761	chr10:25637217-25637218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs1760759	chr10:25637243-25637244	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs10508692	chr10:25637270-25637271	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs568698460	chr10:25637284-25637285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs540473942	chr10:25637319-25637320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs370728953	chr10:25637326-25637327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs3220916	chr10:25637327-25637328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs142269031	chr10:25637335-25637336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs34088676	chr10:25637365-25637366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs369945614	chr10:25637401-25637402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs139773985	chr10:25637452-25637453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs74123864	chr10:25637491-25637492	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs187719214	chr10:25637492-25637493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs571456196	chr10:25637506-25637507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs111505083	chr10:25637527-25637528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs2807255	chr10:25637528-25637529	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs548422589	chr10:25637536-25637537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs568265203	chr10:25637549-25637550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs74123865	chr10:25637599-25637600	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs7915893	chr10:25637606-25637607	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:44)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Glioblastoma multiforme	21525872	CNVD
Cancer	20164919	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25632400-25642600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25639200-25640200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:25639400-25639800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links