Variant report

Variant	rs16926019
Chromosome Location	chr10:25797845-25797846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10159703	1.00[CEU][hapmap]
rs11014525	1.00[CEU][hapmap]
rs12267402	1.00[CEU][hapmap]
rs1329253	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1536837	0.86[YRI][hapmap]
rs16926013	1.00[CEU][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs16926017	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57001691	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58006889	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58481217	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58781151	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61549511	0.90[AMR][1000 genomes]
rs6482486	1.00[CEU][hapmap]
rs6482487	1.00[CEU][hapmap]
rs7085469	1.00[CEU][hapmap]
rs74124044	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25791600-25800400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:25792800-25811600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25796600-25798000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:25796800-25798000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:25796800-25798400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:25797000-25798000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:25797000-25798600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr10:25797200-25798000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:25797200-25798000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr10:25797200-25798000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:25797200-25798000	Enhancers	K562	blood
12	chr10:25797200-25798200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr10:25797200-25798200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:25797200-25798200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr10:25797200-25798400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:25797400-25798000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:25797400-25798000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:25797400-25798400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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