Variant report

Variant	rs6482486
Chromosome Location	chr10:25785043-25785044
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25784904..25787505-chr10:25794362..25797121,3	K562	blood:
2	chr10:25781802..25784732-chr10:25785039..25787910,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10159703	1.00[CEU][hapmap]
rs11014525	1.00[CEU][hapmap]
rs11014578	0.97[ASN][1000 genomes]
rs12267402	1.00[CEU][hapmap]
rs1329253	1.00[CEU][hapmap]
rs16926013	1.00[CEU][hapmap]
rs16926017	1.00[CEU][hapmap]
rs16926019	1.00[CEU][hapmap]
rs3886350	0.91[JPT][hapmap]
rs6482487	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7085469	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25781600-25788200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:25782200-25788200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:25782400-25792200	Weak transcription	Brain Anterior Caudate	brain
4	chr10:25782800-25785200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:25782800-25785600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:25782800-25786200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:25783000-25785200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:25783000-25788400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:25783200-25785600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:25783200-25786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:25783200-25788400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:25783200-25788600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:25783200-25797200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:25783600-25785400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr10:25783600-25788200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:25784000-25785200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:25784000-25785200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:25784000-25788400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:25784200-25788600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:25784400-25785400	Weak transcription	K562	blood
21	chr10:25784800-25785800	Enhancers	Placenta Amnion	Placenta Amnion
22	chr10:25784800-25786000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:25784800-25786400	Enhancers	Fetal Heart	heart
24	chr10:25785000-25785800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:25785000-25786000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:25785000-25786200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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