Variant report

Variant	rs10508697
Chromosome Location	chr10:25789096-25789097
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25788785..25792854-chr10:25793449..25797188,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10508702	1.00[EUR][1000 genomes]
rs11014524	1.00[EUR][1000 genomes]
rs11014525	1.00[EUR][1000 genomes]
rs12268579	1.00[EUR][1000 genomes]
rs16925709	1.00[EUR][1000 genomes]
rs16925917	0.82[JPT][hapmap]
rs16925980	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs55979690	1.00[EUR][1000 genomes]
rs7073280	1.00[ASN][1000 genomes]
rs7076543	1.00[ASN][1000 genomes]
rs7094805	1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25782400-25792200	Weak transcription	Brain Anterior Caudate	brain
2	chr10:25783200-25797200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:25785800-25791200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:25786000-25791000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:25786400-25790400	Weak transcription	Fetal Heart	heart
6	chr10:25786800-25790800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:25787600-25789400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:25788000-25790600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:25788000-25791800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr10:25788200-25789200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:25788400-25789200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr10:25788400-25790400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:25788400-25790800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:25788400-25792000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:25788600-25789200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr10:25788600-25789400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr10:25788600-25789800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:25788600-25789800	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:25788600-25791000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:25788800-25790000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:25788800-25790800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:25788800-25791400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:25789000-25790600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:25789000-25791200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:25789000-25791200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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