Variant report
| Variant | rs72792047 |
|---|---|
| Chromosome Location | chr10:25413277-25413278 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GPR158-1 | chr10:25413230-25413320 | NONHSAT011799 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs17532593 | 1.00[AMR][1000 genomes] |
| rs17616467 | 0.93[AMR][1000 genomes] |
| rs41279898 | 1.00[AMR][1000 genomes] |
| rs55887146 | 0.81[EUR][1000 genomes] |
| rs56176936 | 1.00[AMR][1000 genomes] |
| rs56281542 | 1.00[AMR][1000 genomes] |
| rs61084611 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72782209 | 0.81[EUR][1000 genomes] |
| rs72782210 | 0.95[EUR][1000 genomes] |
| rs72782214 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72782215 | 0.93[AMR][1000 genomes] |
| rs72782217 | 1.00[AMR][1000 genomes] |
| rs72782219 | 1.00[AMR][1000 genomes] |
| rs72782220 | 1.00[AMR][1000 genomes] |
| rs72782221 | 1.00[AMR][1000 genomes] |
| rs72782222 | 1.00[AMR][1000 genomes] |
| rs72782223 | 1.00[AMR][1000 genomes] |
| rs72782224 | 1.00[AMR][1000 genomes] |
| rs72782225 | 1.00[AMR][1000 genomes] |
| rs72782226 | 1.00[AMR][1000 genomes] |
| rs72782227 | 1.00[AMR][1000 genomes] |
| rs72782228 | 1.00[AMR][1000 genomes] |
| rs72782229 | 1.00[AMR][1000 genomes] |
| rs72782230 | 0.86[AMR][1000 genomes] |
| rs72792045 | 1.00[AMR][1000 genomes] |
| rs72792046 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894970 | chr10:25385858-25522280 | Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv894971 | chr10:25403234-25522280 | Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25392400-25414200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
