Variant report

Variant	rs55887146
Chromosome Location	chr10:25372924-25372925
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25372240..25374997-chr10:25377094..25379582,2	K562	blood:
2	chr10:25305403..25308444-chr10:25369519..25373361,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56140300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72780398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72782209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72782210	0.87[EUR][1000 genomes]
rs72782214	0.84[EUR][1000 genomes]
rs72792047	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25367600-25374200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:25369400-25373400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:25369400-25374000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:25369800-25373000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:25369800-25373000	Enhancers	Ovary	ovary
6	chr10:25369800-25373400	Enhancers	Brain Anterior Caudate	brain
7	chr10:25369800-25373400	Enhancers	Brain Cingulate Gyrus	brain
8	chr10:25369800-25373800	Enhancers	Brain Angular Gyrus	brain
9	chr10:25370000-25374800	Weak transcription	K562	blood
10	chr10:25370600-25373000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:25370600-25374400	Weak transcription	A549	lung
12	chr10:25371800-25373400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:25372000-25373000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:25372000-25373400	Enhancers	Fetal Heart	heart
15	chr10:25372400-25373000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr10:25372400-25373400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:25372600-25373000	Flanking Active TSS	Brain Substantia Nigra	brain
18	chr10:25372800-25373000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:25372800-25373000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:25372800-25373000	Flanking Active TSS	Brain Hippocampus Middle	brain
21	chr10:25372800-25373000	Enhancers	NH-A	brain

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