Variant report

Variant	rs11014380
Chromosome Location	chr10:25361365-25361366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10508683	1.00[ASN][1000 genomes]
rs10508684	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10828746	0.83[EUR][1000 genomes]
rs11014323	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014328	0.91[AMR][1000 genomes]
rs11014335	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014339	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11014343	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11014363	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11014370	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11014371	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11014373	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11014378	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11014386	1.00[ASN][1000 genomes]
rs11014391	1.00[ASN][1000 genomes]
rs12146293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12252715	1.00[ASN][1000 genomes]
rs12266610	1.00[ASN][1000 genomes]
rs12359325	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16925243	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16925280	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925307	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41279888	0.81[EUR][1000 genomes]
rs56140300	1.00[ASN][1000 genomes]
rs61853351	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61856073	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61856075	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72780394	1.00[ASN][1000 genomes]
rs72780398	1.00[ASN][1000 genomes]
rs7901590	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25358000-25361400	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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