Variant report

Variant	rs16925307
Chromosome Location	chr10:25351578-25351579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:25350138..25352241-chr10:25355108..25357944,2	MCF-7	breast:
2	chr10:25344528..25346562-chr10:25350767..25353027,3	K562	blood:
3	chr10:25303827..25307133-chr10:25349437..25354097,8	K562	blood:
4	chr10:25334592..25336921-chr10:25350299..25353033,2	K562	blood:
5	chr10:25349510..25351855-chr10:25352161..25354821,2	MCF-7	breast:
6	chr10:25303827..25307969-chr10:25351029..25354599,5	K562	blood:
7	chr10:25307575..25310244-chr10:25349571..25352250,2	MCF-7	breast:
8	chr10:25344134..25348116-chr10:25349607..25352644,3	MCF-7	breast:
9	chr10:25304955..25307281-chr10:25348708..25354586,7	MCF-7	breast:
10	chr10:25239858..25243208-chr10:25347592..25352504,4	K562	blood:
11	chr10:25350226..25351753-chr10:25385209..25386887,2	K562	blood:
12	chr10:25306123..25307821-chr10:25350955..25353147,2	MCF-7	breast:
13	chr10:25239858..25242854-chr10:25350195..25352504,2	K562	blood:
14	chr10:25345062..25348953-chr10:25349936..25353027,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000099256	Chromatin interaction
ENSG00000185875	Chromatin interaction
ENSG00000151023	Chromatin interaction
ENSG00000273107	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10508684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508687	1.00[ASN][1000 genomes]
rs10828742	1.00[ASN][1000 genomes]
rs10828746	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014323	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014328	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11014332	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014335	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014339	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014343	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014355	1.00[ASN][1000 genomes]
rs11014363	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014374	1.00[ASN][1000 genomes]
rs11014376	1.00[ASN][1000 genomes]
rs11014378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014380	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12146293	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12242409	1.00[ASN][1000 genomes]
rs12359325	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925243	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925280	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41279888	0.82[EUR][1000 genomes]
rs61853351	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856073	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856075	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25348200-25351600	Enhancers	Placenta Amnion	Placenta Amnion
2	chr10:25348200-25352200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:25348400-25351600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:25348400-25352200	Enhancers	Stomach Mucosa	stomach
5	chr10:25348400-25352800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:25348800-25352000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:25350400-25351600	Flanking Active TSS	Fetal Intestine Small	intestine
8	chr10:25350400-25351800	Flanking Active TSS	K562	blood
9	chr10:25350600-25351800	Enhancers	Pancreas	Pancrea
10	chr10:25350600-25351800	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr10:25350600-25351800	Flanking Active TSS	A549	lung
12	chr10:25350600-25351800	Flanking Active TSS	Hela-S3	cervix
13	chr10:25350600-25352000	Enhancers	Lung	lung
14	chr10:25350800-25351600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr10:25350800-25351600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:25350800-25351600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:25350800-25351800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:25350800-25351800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr10:25350800-25351800	Flanking Active TSS	HepG2	liver
20	chr10:25350800-25351800	Flanking Active TSS	NH-A	brain
21	chr10:25351000-25351600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:25351000-25351600	Enhancers	Fetal Lung	lung
23	chr10:25351000-25351800	Active TSS	Colonic Mucosa	Colon
24	chr10:25351000-25351800	Flanking Active TSS	Osteobl	bone
25	chr10:25351000-25352400	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr10:25351200-25351600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:25351200-25351600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr10:25351200-25351600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:25351200-25351600	Active TSS	Liver	Liver
30	chr10:25351200-25351600	Enhancers	Esophagus	oesophagus
31	chr10:25351200-25351600	Active TSS	Fetal Intestine Large	intestine
32	chr10:25351200-25351600	Enhancers	Gastric	stomach
33	chr10:25351200-25351600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr10:25351200-25351800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:25351200-25351800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
36	chr10:25351200-25351800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:25351200-25351800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:25351200-25351800	Enhancers	Placenta	Placenta
39	chr10:25351200-25351800	Active TSS	Rectal Smooth Muscle	rectum
40	chr10:25351200-25351800	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr10:25351200-25351800	Flanking Active TSS	HSMM	muscle
42	chr10:25351200-25351800	Flanking Active TSS	HSMMtube	muscle
43	chr10:25351200-25351800	Enhancers	NHDF-Ad	bronchial
44	chr10:25351200-25352200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr10:25351200-25352200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr10:25351200-25352400	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr10:25351200-25352600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:25351200-25352600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr10:25351400-25351600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:25351400-25351600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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