Variant report

Variant	rs10508684
Chromosome Location	chr10:25356267-25356268
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25352997..25355657-chr10:25355970..25357954,2	K562	blood:
2	chr10:25350138..25352241-chr10:25355108..25357944,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10508683	1.00[GIH][hapmap]
rs10508687	1.00[ASN][1000 genomes]
rs10828742	1.00[ASN][1000 genomes]
rs10828746	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014323	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014328	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11014332	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014335	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014339	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014343	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014355	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11014363	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014370	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014371	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014374	1.00[ASN][1000 genomes]
rs11014376	1.00[ASN][1000 genomes]
rs11014378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014380	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12146293	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12242409	1.00[ASN][1000 genomes]
rs12258541	1.00[GIH][hapmap]
rs12359325	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925243	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925280	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41279888	0.82[EUR][1000 genomes]
rs61853351	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856073	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856075	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901590	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25351600-25357000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:25351600-25357200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:25351800-25356800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:25351800-25356800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:25351800-25356800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:25351800-25356800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:25351800-25356800	Weak transcription	HUVEC	blood vessel
8	chr10:25351800-25356800	Weak transcription	NH-A	brain
9	chr10:25351800-25356800	Weak transcription	Osteobl	bone
10	chr10:25352200-25356800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:25352400-25356800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:25353600-25356600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:25353600-25356600	Weak transcription	HMEC	breast
14	chr10:25353600-25356800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:25353800-25356600	Weak transcription	NHEK	skin
16	chr10:25354800-25356800	Weak transcription	HepG2	liver
17	chr10:25355000-25356800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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