Variant report

Variant	rs11014335
Chromosome Location	chr10:25274964-25274965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25241696..25243318-chr10:25272878..25275515,2	K562	blood:
2	chr10:25012272..25014940-chr10:25274213..25277169,2	MCF-7	breast:
3	chr10:25249069..25251777-chr10:25273564..25275756,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107863	Chromatin interaction
ENSG00000273107	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10508684	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508687	1.00[ASN][1000 genomes]
rs10828742	1.00[ASN][1000 genomes]
rs10828746	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014328	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014332	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014355	1.00[ASN][1000 genomes]
rs11014363	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014370	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014371	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014373	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014374	1.00[ASN][1000 genomes]
rs11014376	1.00[ASN][1000 genomes]
rs11014378	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014380	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12146293	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12242409	1.00[ASN][1000 genomes]
rs12359325	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925243	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925280	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925307	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41279888	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61853351	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25264400-25277600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:25264400-25277800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:25264400-25281800	Weak transcription	Fetal Intestine Small	intestine
4	chr10:25264600-25292200	Weak transcription	Ovary	ovary
5	chr10:25269200-25277800	Weak transcription	Brain Angular Gyrus	brain
6	chr10:25269600-25275400	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:25269600-25276600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:25271200-25277800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:25272400-25276000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:25272400-25277800	Weak transcription	Gastric	stomach
11	chr10:25272400-25281000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:25273800-25276000	Weak transcription	Brain Substantia Nigra	brain
13	chr10:25274200-25278200	Weak transcription	A549	lung
14	chr10:25274400-25277800	Weak transcription	Adipose Nuclei	Adipose

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