Variant report

Variant	rs72780394
Chromosome Location	chr10:25373184-25373185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10508683	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014380	1.00[ASN][1000 genomes]
rs11014386	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014391	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252715	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266610	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56140300	1.00[ASN][1000 genomes]
rs72780398	1.00[ASN][1000 genomes]
rs7901590	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25367600-25374200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:25369400-25373400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:25369400-25374000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:25369800-25373400	Enhancers	Brain Anterior Caudate	brain
5	chr10:25369800-25373400	Enhancers	Brain Cingulate Gyrus	brain
6	chr10:25369800-25373800	Enhancers	Brain Angular Gyrus	brain
7	chr10:25370000-25374800	Weak transcription	K562	blood
8	chr10:25370600-25374400	Weak transcription	A549	lung
9	chr10:25371800-25373400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:25372000-25373400	Enhancers	Fetal Heart	heart
11	chr10:25372400-25373400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:25373000-25373200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:25373000-25373600	Enhancers	Brain Hippocampus Middle	brain
14	chr10:25373000-25374000	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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