Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25253127..25256241-chr10:25256724..25259023,3	K562	blood:
2	chr10:25253735..25256241-chr10:25257009..25259023,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10508683	0.85[GIH][hapmap];0.81[TSI][hapmap]
rs10828735	1.00[JPT][hapmap]
rs11014355	0.84[EUR][1000 genomes]
rs11014370	0.85[GIH][hapmap]
rs11014371	0.85[GIH][hapmap]
rs12255703	1.00[JPT][hapmap]
rs12256206	1.00[JPT][hapmap]
rs12258541	0.85[GIH][hapmap]
rs1409306	1.00[JPT][hapmap]
rs16925145	1.00[JPT][hapmap]
rs2220708	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59876862	0.98[AFR][1000 genomes]
rs6482453	1.00[JPT][hapmap]
rs6482455	1.00[JPT][hapmap]
rs6482465	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7072126	1.00[JPT][hapmap]
rs7078660	1.00[JPT][hapmap]
rs7080496	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7084900	1.00[JPT][hapmap]
rs7087994	1.00[JPT][hapmap]
rs7100005	1.00[JPT][hapmap]
rs729141	1.00[JPT][hapmap]
rs7901590	0.85[GIH][hapmap];0.81[TSI][hapmap]
rs7910241	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3377854	chr10:25254646-25258844	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25249200-25258600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:25249200-25258600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:25249200-25262200	Weak transcription	Fetal Stomach	stomach
4	chr10:25249200-25263800	Weak transcription	Ovary	ovary
5	chr10:25249400-25258200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:25251000-25263800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:25253200-25262000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:25253200-25264000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:25254400-25257800	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:25256400-25264400	Weak transcription	Gastric	stomach
11	chr10:25256800-25258200	Weak transcription	NHDF-Ad	bronchial
12	chr10:25257000-25259000	Weak transcription	Fetal Kidney	kidney

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