Variant report

Variant	rs7078660
Chromosome Location	chr10:25220033-25220034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:25218744..25220681-chr10:25231634..25233953,2	K562	blood:
2	chr10:25217615..25220140-chr10:25224103..25226604,2	K562	blood:
3	chr10:25218576..25220907-chr10:25243610..25245926,2	K562	blood:
4	chr10:25219739..25221731-chr10:25228623..25231454,2	K562	blood:
5	chr10:25216805..25220140-chr10:25223845..25226604,5	K562	blood:
6	chr10:25217701..25221558-chr10:25232453..25235331,3	K562	blood:
7	chr10:25219563..25221699-chr10:25239688..25242316,2	MCF-7	breast:
8	chr10:25210198..25211999-chr10:25218381..25220970,2	K562	blood:
9	chr10:24930558..24933512-chr10:25219786..25221929,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000099256	Chromatin interaction
ENSG00000273107	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10828735	1.00[JPT][hapmap]
rs11014282	0.83[ASN][1000 genomes]
rs11014306	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014307	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014308	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014309	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255703	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256206	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257709	0.83[ASN][1000 genomes]
rs1409306	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925135	0.83[ASN][1000 genomes]
rs16925138	0.83[ASN][1000 genomes]
rs16925145	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220708	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4504964	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57654443	1.00[ASN][1000 genomes]
rs57681668	0.83[ASN][1000 genomes]
rs59876862	1.00[ASN][1000 genomes]
rs61854283	0.83[ASN][1000 genomes]
rs6482453	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6482454	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482455	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482465	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7072126	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7075926	1.00[ASN][1000 genomes]
rs7080496	0.83[ASN][1000 genomes]
rs7084900	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087994	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs7100005	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs729141	1.00[JPT][hapmap]
rs73606586	1.00[ASN][1000 genomes]
rs73606590	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606602	1.00[ASN][1000 genomes]
rs73608205	1.00[ASN][1000 genomes]
rs7905478	1.00[ASN][1000 genomes]
rs7910241	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918015	1.00[CEU][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25191600-25240600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:25195400-25223400	Weak transcription	Fetal Brain Female	brain
3	chr10:25198200-25228000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:25210400-25236600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:25210600-25233400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:25210600-25233400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:25211400-25239800	Weak transcription	Fetal Kidney	kidney
8	chr10:25212400-25224800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:25214000-25223200	Weak transcription	Brain Germinal Matrix	brain
10	chr10:25215000-25223400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:25215800-25223400	Weak transcription	Fetal Intestine Small	intestine
12	chr10:25215800-25224400	Weak transcription	Fetal Stomach	stomach
13	chr10:25215800-25240000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:25218400-25223400	Weak transcription	Fetal Lung	lung
15	chr10:25218600-25233400	Weak transcription	NHLF	lung
16	chr10:25218800-25224400	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:25218800-25236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:25219000-25221600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:25219000-25221600	Weak transcription	Fetal Brain Male	brain
20	chr10:25219000-25227000	Weak transcription	Aorta	Aorta
21	chr10:25219000-25236600	Weak transcription	Ovary	ovary
22	chr10:25219200-25224000	Weak transcription	Brain Anterior Caudate	brain
23	chr10:25219200-25224400	Weak transcription	Brain Substantia Nigra	brain
24	chr10:25219200-25227200	Weak transcription	Brain Angular Gyrus	brain
25	chr10:25219200-25227400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:25219200-25233600	Weak transcription	NHDF-Ad	bronchial
27	chr10:25219200-25240000	Weak transcription	Dnd41	blood
28	chr10:25219400-25221600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:25219600-25222800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:25219600-25223800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:25219600-25224200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:25219600-25224400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:25219600-25227200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:25219600-25227400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr10:25219800-25223000	Weak transcription	K562	blood
36	chr10:25219800-25225000	Weak transcription	Brain Hippocampus Middle	brain
37	chr10:25219800-25233200	Weak transcription	A549	lung

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