Variant report

Variant	rs73606602
Chromosome Location	chr10:25250550-25250551
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25249933..25252062-chr10:25253513..25255370,2	K562	blood:
2	chr10:25241989..25244584-chr10:25249705..25252162,2	K562	blood:
3	chr10:25245492..25247955-chr10:25250126..25255906,6	K562	blood:
4	chr10:25241943..25244006-chr10:25248893..25251867,4	MCF-7	breast:
5	chr10:25247885..25251535-chr10:25304121..25307402,5	K562	blood:
6	chr10:25249069..25251777-chr10:25273564..25275756,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000273107	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10508688	1.00[EUR][1000 genomes]
rs11014282	0.83[ASN][1000 genomes]
rs12255703	1.00[ASN][1000 genomes]
rs12256206	1.00[ASN][1000 genomes]
rs12257709	0.83[ASN][1000 genomes]
rs12267132	1.00[EUR][1000 genomes]
rs1409306	1.00[ASN][1000 genomes]
rs16925135	0.83[ASN][1000 genomes]
rs16925138	0.83[ASN][1000 genomes]
rs16925145	1.00[ASN][1000 genomes]
rs16925203	1.00[EUR][1000 genomes]
rs16925210	1.00[EUR][1000 genomes]
rs2220708	0.83[ASN][1000 genomes]
rs4504964	1.00[ASN][1000 genomes]
rs57393039	1.00[EUR][1000 genomes]
rs57654443	1.00[ASN][1000 genomes]
rs57681668	0.83[ASN][1000 genomes]
rs59876862	1.00[ASN][1000 genomes]
rs61854283	0.83[ASN][1000 genomes]
rs6482453	1.00[ASN][1000 genomes]
rs6482454	1.00[ASN][1000 genomes]
rs6482455	1.00[ASN][1000 genomes]
rs6482465	0.83[ASN][1000 genomes]
rs7072126	1.00[ASN][1000 genomes]
rs7075926	1.00[ASN][1000 genomes]
rs7078660	1.00[ASN][1000 genomes]
rs7080496	0.83[ASN][1000 genomes]
rs7084900	1.00[ASN][1000 genomes]
rs7100005	1.00[ASN][1000 genomes]
rs73606586	1.00[ASN][1000 genomes]
rs73606590	1.00[ASN][1000 genomes]
rs73608205	1.00[ASN][1000 genomes]
rs74122949	1.00[EUR][1000 genomes]
rs7905478	1.00[ASN][1000 genomes]
rs7910241	1.00[ASN][1000 genomes]
rs7918015	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25242400-25251400	Weak transcription	Liver	Liver
2	chr10:25242400-25252800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:25242800-25251400	Weak transcription	Fetal Intestine Large	intestine
4	chr10:25242800-25251600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:25243000-25251400	Weak transcription	Fetal Intestine Small	intestine
6	chr10:25247800-25251600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:25248200-25250800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:25248200-25250800	Weak transcription	Stomach Mucosa	stomach
9	chr10:25248200-25251600	Weak transcription	NHEK	skin
10	chr10:25248200-25253800	Weak transcription	Right Atrium	heart
11	chr10:25248400-25250600	Weak transcription	HMEC	breast
12	chr10:25248400-25251600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:25248400-25251600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:25248400-25256600	Weak transcription	Fetal Brain Male	brain
15	chr10:25248400-25256600	Weak transcription	Fetal Kidney	kidney
16	chr10:25248600-25250600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:25248600-25251600	Weak transcription	A549	lung
18	chr10:25248600-25251600	Weak transcription	Hela-S3	cervix
19	chr10:25248600-25251600	Weak transcription	NH-A	brain
20	chr10:25248600-25251800	Weak transcription	K562	blood
21	chr10:25249200-25251000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:25249200-25252600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:25249200-25252800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:25249200-25258600	Weak transcription	Brain Anterior Caudate	brain
25	chr10:25249200-25258600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:25249200-25262200	Weak transcription	Fetal Stomach	stomach
27	chr10:25249200-25263800	Weak transcription	Ovary	ovary
28	chr10:25249400-25251800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:25249400-25258200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:25249800-25253000	Weak transcription	Fetal Muscle Leg	muscle

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