Variant report

Variant	rs74122949
Chromosome Location	chr10:25360466-25360467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10508688	1.00[EUR][1000 genomes]
rs12267132	1.00[EUR][1000 genomes]
rs16925203	1.00[EUR][1000 genomes]
rs16925210	1.00[EUR][1000 genomes]
rs56763344	1.00[AMR][1000 genomes]
rs56915918	1.00[AMR][1000 genomes]
rs57393039	1.00[EUR][1000 genomes]
rs73606602	1.00[EUR][1000 genomes]
rs74122936	1.00[AMR][1000 genomes]
rs74122940	1.00[AMR][1000 genomes]
rs74122941	1.00[AMR][1000 genomes]
rs74122942	1.00[AMR][1000 genomes]
rs74122947	1.00[AMR][1000 genomes]
rs74122948	1.00[AMR][1000 genomes]
rs74122950	1.00[AMR][1000 genomes]
rs74122952	1.00[AMR][1000 genomes]
rs74122954	1.00[AMR][1000 genomes]
rs74125536	1.00[AMR][1000 genomes]
rs74125537	1.00[AMR][1000 genomes]
rs74125539	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25358000-25361400	Weak transcription	HUVEC	blood vessel
2	chr10:25360400-25360600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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