Variant report

Variant	rs74122952
Chromosome Location	chr10:25365868-25365869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56763344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56915918	1.00[AMR][1000 genomes]
rs74122936	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122940	1.00[AMR][1000 genomes]
rs74122941	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122942	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122949	1.00[AMR][1000 genomes]
rs74122950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125536	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125537	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125539	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25365400-25366200	Enhancers	K562	blood
2	chr10:25365400-25370400	Enhancers	Fetal Intestine Large	intestine
3	chr10:25365400-25370400	Enhancers	Fetal Intestine Small	intestine
4	chr10:25365600-25366000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:25365600-25366000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:25365600-25366000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:25365600-25366200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:25365600-25366200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:25365600-25366200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:25365600-25367400	Enhancers	HepG2	liver
11	chr10:25365800-25366200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr10:25365800-25366200	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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