Variant report

Variant	rs74122947
Chromosome Location	chr10:25358656-25358657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56763344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56915918	1.00[AMR][1000 genomes]
rs74122936	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122940	1.00[AMR][1000 genomes]
rs74122941	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122942	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122949	1.00[AMR][1000 genomes]
rs74122950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74122954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125536	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125537	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125539	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25356800-25358800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:25357600-25359000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:25357800-25360000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:25358000-25361400	Weak transcription	HUVEC	blood vessel
5	chr10:25358200-25359200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links