Variant report
| Variant | rs74122950 |
|---|---|
| Chromosome Location | chr10:25364306-25364307 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:25362224..25363937-chr10:25363978..25365901,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs56763344 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56915918 | 1.00[AMR][1000 genomes] |
| rs74122936 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74122940 | 1.00[AMR][1000 genomes] |
| rs74122941 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74122942 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74122947 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74122948 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74122949 | 1.00[AMR][1000 genomes] |
| rs74122952 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74122954 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74125536 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74125537 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74125539 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv550224 | chr10:25335854-25385858 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1036683 | chr10:25337592-25398119 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv894969 | chr10:25345720-25395579 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25364000-25365400 | Weak transcription | K562 | blood |
