Variant report

Variant	rs56915918
Chromosome Location	chr10:25389876-25389877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56763344	1.00[AMR][1000 genomes]
rs74122936	1.00[AMR][1000 genomes]
rs74122940	1.00[AMR][1000 genomes]
rs74122941	1.00[AMR][1000 genomes]
rs74122942	1.00[AMR][1000 genomes]
rs74122947	1.00[AMR][1000 genomes]
rs74122948	1.00[AMR][1000 genomes]
rs74122949	1.00[AMR][1000 genomes]
rs74122950	1.00[AMR][1000 genomes]
rs74122952	1.00[AMR][1000 genomes]
rs74122954	1.00[AMR][1000 genomes]
rs74125536	1.00[AMR][1000 genomes]
rs74125537	1.00[AMR][1000 genomes]
rs74125539	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25386000-25390400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:25386000-25393400	Weak transcription	Brain Anterior Caudate	brain
3	chr10:25386000-25393400	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:25386000-25393400	Weak transcription	Brain Substantia Nigra	brain
5	chr10:25386600-25390600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:25386800-25390400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:25387200-25390200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:25388800-25392800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:25388800-25394400	Enhancers	Fetal Brain Male	brain
10	chr10:25388800-25395200	Enhancers	Fetal Brain Female	brain
11	chr10:25389800-25391000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr10:25389800-25392800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:25389800-25394600	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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