Variant report

Variant	rs12257709
Chromosome Location	chr10:25177233-25177234
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:25175280..25178160-chr10:25364501..25366305,2	K562	blood:
2	chr10:25176620..25181540-chr10:25182272..25186029,7	K562	blood:
3	chr10:25169490..25171894-chr10:25175183..25178196,3	K562	blood:
4	chr10:25112149..25116092-chr10:25174189..25177752,3	MCF-7	breast:
5	chr10:25177136..25181443-chr10:25181822..25184864,5	K562	blood:
6	chr10:25175218..25177894-chr10:25179433..25182351,2	MCF-7	breast:
7	chr10:25175403..25176909-chr10:25176945..25178976,2	MCF-7	breast:
8	chr10:25169490..25172253-chr10:25175948..25178196,2	K562	blood:

No data

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11014282	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12255703	0.83[ASN][1000 genomes]
rs12256206	0.83[ASN][1000 genomes]
rs1409306	0.83[ASN][1000 genomes]
rs1414459	1.00[JPT][hapmap]
rs16925135	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16925138	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16925145	0.83[ASN][1000 genomes]
rs4504964	0.83[ASN][1000 genomes]
rs57654443	0.83[ASN][1000 genomes]
rs59876862	0.83[ASN][1000 genomes]
rs61854283	1.00[ASN][1000 genomes]
rs6482453	0.83[ASN][1000 genomes]
rs6482454	0.83[ASN][1000 genomes]
rs6482455	0.83[ASN][1000 genomes]
rs7072126	0.83[ASN][1000 genomes]
rs7075926	0.83[ASN][1000 genomes]
rs7078660	0.83[ASN][1000 genomes]
rs7084900	0.83[ASN][1000 genomes]
rs7100005	0.83[ASN][1000 genomes]
rs73606586	0.83[ASN][1000 genomes]
rs73606590	0.83[ASN][1000 genomes]
rs73606602	0.83[ASN][1000 genomes]
rs73608205	0.83[ASN][1000 genomes]
rs7905478	0.83[ASN][1000 genomes]
rs7910241	0.83[ASN][1000 genomes]
rs7918015	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25158800-25179600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:25168200-25188200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:25168200-25189000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:25171000-25182200	Weak transcription	Fetal Intestine Small	intestine
5	chr10:25171200-25179000	Weak transcription	Lung	lung
6	chr10:25171400-25178400	Weak transcription	NHDF-Ad	bronchial
7	chr10:25171400-25182200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:25171400-25182600	Weak transcription	K562	blood
9	chr10:25171400-25183200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:25171600-25178400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr10:25172000-25178400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr10:25172600-25178800	Weak transcription	Small Intestine	intestine
13	chr10:25172600-25183600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:25173600-25178200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:25173800-25178400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:25173800-25178800	Weak transcription	Brain Substantia Nigra	brain
17	chr10:25174000-25178200	Weak transcription	HSMM	muscle
18	chr10:25174000-25178400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:25174000-25178600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:25174000-25178600	Weak transcription	NH-A	brain
21	chr10:25174000-25186200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:25174200-25178200	Weak transcription	HMEC	breast
23	chr10:25174200-25178200	Weak transcription	HSMMtube	muscle
24	chr10:25174200-25178200	Weak transcription	NHEK	skin
25	chr10:25174200-25179600	Weak transcription	Brain Anterior Caudate	brain
26	chr10:25174400-25178000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:25174400-25178200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:25174400-25178200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:25174600-25178800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:25174600-25179000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:25175400-25177600	Enhancers	Primary B cells from peripheral blood	blood
32	chr10:25175800-25177800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr10:25175800-25178000	Weak transcription	Esophagus	oesophagus
34	chr10:25175800-25178800	Weak transcription	Placenta	Placenta
35	chr10:25175800-25179000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:25175800-25189800	Weak transcription	Stomach Mucosa	stomach
37	chr10:25175800-25190000	Weak transcription	Fetal Lung	lung
38	chr10:25176000-25183400	Weak transcription	Pancreas	Pancrea
39	chr10:25176200-25177400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr10:25176400-25177400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr10:25176400-25177400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr10:25176400-25183200	Weak transcription	Fetal Stomach	stomach
43	chr10:25176600-25177400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:25176600-25177800	Enhancers	Primary T cells from cord blood	blood
45	chr10:25176800-25177400	Flanking Active TSS	GM12878-XiMat	blood
46	chr10:25176800-25183200	Weak transcription	Thymus	Thymus
47	chr10:25177000-25177400	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr10:25177000-25177600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr10:25177000-25177600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr10:25177000-25178200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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