Variant report

Variant	rs4504964
Chromosome Location	chr10:25208507-25208508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11014282	0.83[ASN][1000 genomes]
rs11014306	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014307	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014308	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014309	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255703	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256206	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257709	0.83[ASN][1000 genomes]
rs1409306	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925135	0.83[ASN][1000 genomes]
rs16925138	0.83[ASN][1000 genomes]
rs16925145	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220708	0.83[ASN][1000 genomes]
rs57654443	1.00[ASN][1000 genomes]
rs57681668	0.83[ASN][1000 genomes]
rs59876862	1.00[ASN][1000 genomes]
rs61854283	0.83[ASN][1000 genomes]
rs6482453	1.00[ASN][1000 genomes]
rs6482454	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482455	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482465	0.83[ASN][1000 genomes]
rs7072126	1.00[ASN][1000 genomes]
rs7075926	1.00[ASN][1000 genomes]
rs7078660	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080496	0.83[ASN][1000 genomes]
rs7084900	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100005	1.00[ASN][1000 genomes]
rs73606586	1.00[ASN][1000 genomes]
rs73606590	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606602	1.00[ASN][1000 genomes]
rs73608205	1.00[ASN][1000 genomes]
rs7905478	1.00[ASN][1000 genomes]
rs7910241	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918015	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25191600-25240600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:25193400-25210200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25195400-25223400	Weak transcription	Fetal Brain Female	brain
4	chr10:25196400-25212000	Weak transcription	Fetal Stomach	stomach
5	chr10:25198200-25228000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:25198400-25217800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:25199000-25210200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:25199200-25210000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:25201200-25210200	Weak transcription	Right Atrium	heart
10	chr10:25201400-25210200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr10:25202000-25210000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:25202000-25210200	Weak transcription	Left Ventricle	heart
13	chr10:25202200-25210200	Weak transcription	Small Intestine	intestine
14	chr10:25202400-25218000	Weak transcription	Fetal Lung	lung
15	chr10:25202800-25210000	Weak transcription	Stomach Mucosa	stomach
16	chr10:25204800-25209800	Weak transcription	Brain Angular Gyrus	brain
17	chr10:25204800-25209800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:25204800-25209800	Weak transcription	Brain Substantia Nigra	brain
19	chr10:25204800-25210000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:25204800-25210200	Weak transcription	Aorta	Aorta
21	chr10:25205000-25209800	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:25205000-25210000	Weak transcription	Brain Anterior Caudate	brain
23	chr10:25205000-25210000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:25205200-25210200	Weak transcription	Ovary	ovary
25	chr10:25205400-25208800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:25205400-25209200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr10:25205400-25209400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr10:25205400-25211800	Weak transcription	Fetal Intestine Small	intestine
29	chr10:25205600-25209400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:25205600-25209400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr10:25206200-25209800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:25206400-25211600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:25207600-25210000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr10:25208000-25209800	Weak transcription	K562	blood

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